PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102600.1
Common NameCsa_6G491080, LOC101214001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 295aa    MW: 32086.5 Da    PI: 10.2803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31223280359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Cucsa.102600.1 223 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPAMLVVTYEGEHNHT 280
                     99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.1E-18172219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.6E-33209280IPR003657WRKY domain
PROSITE profilePS5081130.997216282IPR003657WRKY domain
SuperFamilySSF1182906.8E-27218280IPR003657WRKY domain
SMARTSM007745.7E-38221281IPR003657WRKY domain
PfamPF031064.9E-27223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAVDLISHLS PLPTMEPNAV QEATSGLESV HKLIRLLSIP NPHSLPSSTQ SPIDFPTDCR  60
AAADAAVSKF KKVISLLGRS RLGHARFRRA PLPQQPHYVT PIQQIPPHPH LNNNNNINDE  120
SLNFSAHNSF ISSLTGDADT KHPSSSSSPF LISNLSQVSS AGKPPLSSSS LKRKCSSENL  180
RSGKCAAASS SSRCHCSKKR KLRVKRVVRV PAISLKMADI PPDDYSWRKY GQKPIKGSPH  240
PRGYYKCSSV RGCPARKHVE RAVDDPAMLV VTYEGEHNHT LSLPETSTLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21209281273WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5827460.0KT582746.1 Benincasa hispida var. chieh-qua cultivar A39FA WRKY transcription factor 45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141905.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221766e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0A0KFT60.0A0A0A0KFT6_CUCSA; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.14e-61WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]